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Fix call to spotiflow#1

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Fix call to spotiflow#1
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@guiwitz guiwitz commented Dec 15, 2025 •
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It seems that the current call to spotify.cli doesn't works as expected at least on Mac/Linux. This is a suggested fix for that call. See https://forum.image.sc/t/trackmate-spotiflow-not-running/118137?u=guiwitz for more details.

I compiled an alternative plugin locally using this PR and it seems to work.

@guiwitz guiwitz changed the title Fix call to spotify Fix call to spotiflow Dec 15, 2025
@tinevez tinevez self-assigned this Dec 15, 2025
@tinevez tinevez added the bug Something isn't working label Dec 15, 2025
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tinevez commented Dec 15, 2025

I think the problem is more general. Trackastra, using the same system, depends on this as well.
Let me investigate in the core artifact.

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guiwitz commented Dec 15, 2025

The difference of spotify compared to trackastra and cellpose is that the client is registered with a different name than the package itself. So while you can just call cellpose or trackastra from the terminal and this will launch their clients, for spotiflow you need spotiflow-predict. See here for trackastra and here for cellpose.

So either you use spotiflow-predict or you call the module.

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guiwitz commented Dec 15, 2025

I'm just not sure what was the intention behind going from spotiflow-predict to the client here.

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imagesc-bot commented Dec 15, 2025

This pull request has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/trackmate-spotiflow-not-running/118137/4

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